kmsouthard's Stars
hbctraining/DGE_workshop
oaoni/HyperInteractive
Interactive exploration of hyperparameter tuning results with ipywidget and plotly in jupyter notebook.
BioPandas/biopandas
Working with molecular structures in pandas DataFrames
dlab-berkeley/Machine-Learning-in-R
Workshop (6 hours): preprocessing, cross-validation, lasso, decision trees, random forest, xgboost, superlearner ensembles
dlab-berkeley/Python-Machine-Learning
D-Lab's 6 hour introduction to machine learning in Python. Learn how to perform classification, regression, clustering, and do model selection using scikit-learn in Python.
ChloeHJ/Vaccine-target-for-2019-nCoV
In silico identification of vaccine targets for 2019-nCoV
pcm-dpc/COVID-19
COVID-19 Italia - Monitoraggio situazione
derekeder/csv-to-html-table
:arrow_down_small: Display any CSV (comma separated values) file as a searchable, filterable, pretty HTML table
jokergoo/ComplexHeatmap
Make Complex Heatmaps
ebi-pf-team/interproscan
Genome-scale protein function classification
voxelmorph/voxelmorph
Unsupervised Learning for Image Registration
John-Jumper/Upside-MD
Coarse-grained molecular dynamics for protein physics
andrewgbruce/statistics-for-data-scientists
Code and data associated with the book "Statistics for Data Scientists: 50 Essential Concepts"
scverse/scanpy
Single-cell analysis in Python. Scales to >1M cells.
theislab/diffxpy
Differential expression analysis for single-cell RNA-seq data.
hadim/maskflow-fiji
A Fiji plugin for object detection and tracking based on MaskRCNN.
AntonMu/TrainYourOwnYOLO
Train a state-of-the-art yolov3 object detector from scratch!
ParkerICI/flow-analysis-tutorial
A tutorial for the analysis of high-dimensional flow cytometry data
ParkerICI/panorama
R package for interactive visualization and analysis of single-cell data
ParkerICI/grappolo
R package to cluster single-cell data and generate features that can be used for model building
ParkerICI/premessa
R package for pre-processing of mass and flow cytometry data
ParkerICI/vite
R package for analysis of single-cell data using graphs
graik/biskit
A Python platform for Structural Bioinformatics
crazyhottommy/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
EnzoAndree/HmmPy
A Pure-Python parser of HMMER3 output
KULL-Centre/papers
Material from papers from KULL centre
ImSoErgodic/py-upset
A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.
Data-Liberation-Front/csvhub
Chrome extension to show nice CSV diffs on GitHub
greenelab/BioBombe
BioBombe: Sequentially compressed gene expression features enhances biological signatures
hammerlab/cohorts
Utilities for analyzing mutations and neoepitopes in patient cohorts