kmuench

kmuench's Stars

• freeCodeCamp/freeCodeCamp

  freeCodeCamp.org's open-source codebase and curriculum. Learn to code for free.

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• TheAlgorithms/Python

  All Algorithms implemented in Python

  Language:Python192k5.9k1.5k45.3k

• huggingface/transformers

  🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

  Language:Python133k1.1k15.9k26.7k

• ml-explore/mlx-examples

  Examples in the MLX framework

  Language:Python6k73485858

• github/choosealicense.com

  A site to provide non-judgmental guidance on choosing a license for your open source project

  Language:Ruby3.7k4693401.3k

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.2k24823976

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.1k17010611

• rahulnyk/knowledge_graph

  Convert any text to a graph of knowledge. This can be used for Graph Augmented Generation or Knowledge Graph based QnA

  Language:Jupyter Notebook1.5k2317287

• theislab/single-cell-tutorial

  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

  Language:Jupyter Notebook1.4k45101454

• MaxHalford/prince

  :crown: Multivariate exploratory data analysis in Python — PCA, CA, MCA, MFA, FAMD, GPA

  Language:Python1.3k26133182

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k261k346

• owkin/PyDESeq2

  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

  Language:Python5831012861

• hbctraining/DGE_workshop

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• adw96/biostat561

  Course materials for BIOST561

  Language:R26937070

• davidaknowles/leafcutter

  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

  Language:R20320232113

• snap-stanford/GEARS

  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations

  Language:Python20067839

• gbouras13/phold

  Phage Annotation using Protein Structures

  Language:Python814284

• statdivlab/radEmu

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• jessemzhang/tn_test

  post-clustering differential expression test

  Language:Jupyter Notebook35428

• erilu/pubmed-abstract-compiler

  Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utility queries

  Language:Jupyter Notebook26108

• microsoft/Nclusion.jl

  Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data

  Language:Julia17551

• emc2cube/Bioinformatics

  Set of high throughput sequencing analysis scripts to quickly generate and queue jobs on SLURM-based HPC clusters.

  Language:Shell8302

• statdivlab/radEmu_supplementary

  Language:R120

• TheAustinator/datacrate

  A data science container with RStudio and tricked out Jupyter Lab

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