knausb
Evolutionary genomicist, computational biologist. Born and raised in Ann Arbor, MI. Currently living in Corvallis, OR.
Oregon State UniversityCorvallis, OR, USA
Pinned Repositories
bam_processing
Process SAM/BAM files accroding to the 1k genomes methods
coveRage
Tools to explore sequencing coverage in high-throughput sequencing projects
knausb.github.io
Brian J. Knaus's GitHub home
myRFinance
myRPkg
Build an R package that includes Roxygen2 and Rcpp
nuccomp
Summarize the contents of FASTA files.
pinfsc50
Phytophthora infestans supercontig_1.50
soilborne_disease_analysis
Soilborne Disease Data Collection and Analysis
vcfR
Tools to work with variant call format files
vcfR_documentation
Documentation for vcfR
knausb's Repositories
knausb/vcfR
Tools to work with variant call format files
knausb/vcfR_documentation
Documentation for vcfR
knausb/bam_processing
Process SAM/BAM files accroding to the 1k genomes methods
knausb/nuccomp
Summarize the contents of FASTA files.
knausb/myRFinance
knausb/soilborne_disease_analysis
Soilborne Disease Data Collection and Analysis
knausb/APS_IntroR_2020
Materials for the 2020 APS introduction to R workshop
knausb/opp_card
Open Plant Pathology buisness card
knausb/OrthoMCL_notes
Notes on how to use OrthoMCL
knausb/posters
Posters I've presented at conferences
knausb/knausb.github.io
Brian J. Knaus's GitHub home
knausb/pinfsc50
Phytophthora infestans supercontig_1.50
knausb/adegenet
adegenet: a R package for the multivariate analysis of genetic markers
knausb/BUSCOplot
Plots based on BUSCO results
knausb/codingofkindness
Let’s figure out how to be better humans to each other
knausb/compbio
Comp bio
knausb/effectR
An R package to call oomycete effectors
knausb/faraway_2004
Faraway 2004: Linear Models with R
knausb/GAPIT3
Genome Association Predict Integrate Tools
knausb/GAPIT3documentation
knausb/hemp_tools
Tools for working on hemp genomics
knausb/hempTools
Tolls for hemp projects
knausb/learning_R
A base R guy teaching R to new users so he can learn tidyverse
knausb/myRhtslib
Learning Rhtslib
knausb/pegas
Population and Evolutionary Genetics Analysis System
knausb/proc_mpileup
Process a directory of gzipped samtools mpileup files, take coverage count, standard deviation, and nonzero counts for each and write to one table
knausb/R_misc
Miscellaneous R stuff
knausb/tidy_tuesday_template
template file for sharing tidy tuesday visualizations
knausb/TidyTuesday_BPP
BPP and BPP alums meet for Tidy Tuesday
knausb/venables_ripley
Examples from Venables and Ripley