For information about the modification "FIMTrack_extension" for fish tracking see README_FIMTrack-extension-for-fish.txt.
Original README content:
FIMTrack is a larval tracking program to acquire locomotion trajectories and conformation information of Drosophila melanogaster larvae. It is optimized for FIM images. FIM is an acronym for FTIR-based Imaging Method, whereby FTIR is the short form for Frustrated Total Internal Reflection. Details can be found in
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B. Risse, S. Thomas, N. Otto, T. Löpmeier, D. Valkov, X. Jiang, and C. Klämbt, "FIM, a Novel FTIR-Based Imaging Method for High Throughput Locomotion Analysis," PLoS ONE, vol. 8, no. 1, p. e53963, Jan. 2013.
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Risse, B., Jiang, X., & Klämbt, C. (2013). FIM: Frustrated Total Internal Reflection Based Imaging for Biomedical Applications. ERCIM News, 95(Image Understanding), 11-12.
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B. Risse, N. Otto, D. Berh, X. Jiang, and C. Klämbt, "FIM Imaging and FIMTrack: Two New Tools Allowing High-throughput and Cost Effective Locomotion Analysis," Journal of Visualized Experiments: JoVE, no. 94, p. e52207, 2014.
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B. Risse, D. Berh, N. Otto, X. Jiang, and C. Klämbt, "Quantifying subtle locomotion phenotypes of Drosophila larvae using internal structures based on FIM images," Computers in Biology and Medicine, vol. 63, pp. 269-276, 2015.
For more informations contact fim[AT]uni-muenster[DOT]de
First download QCustomPlot (ver. 1.3.2) and place the header file qcustomplot.h
and the source files qcustomplot.cpp
in the Utility
folder of FIMTrack.
These are instructions for Ubuntu/Debian systems, the packages should be similar on other distributions.
sudo apt-get install git libopencv-dev qt5-default g++
git clone https://github.com/i-git/FIMTrack.git FIMTrack
cd FIMTrack
qmake FIMTrack.pro
make
cd build/release/bin
./FIMTrack
We suggest to use Xcode and Homebrew for building FIMTrack on Mac OS X.
- Git
sudo brew install git
- OpenCV
sudo brew tap homebrew/science
sudo brew install opencv --c++11
- Qt
sudo brew tap homebrew/versions
sudo brew install qt5
sudo brew link --force qt5
git clone https://github.com/i-git/FIMTrack.git FIMTrack
cd FIMTrack
qmake FIMTrack.pro
make
cd build/release/bin
./FIMTrack