proxigenomics

Elements of Hi-C analysis, primarily intended for metagenomic samples.

###Simulation Pipeline

For work detailed in the manuscript:

"Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C)"

the described pipeline is contained within this repository at: simulation/pipeline.
the resulting simulated dataset is publicly hosted at: http://doi.org/10.4225/59/57b0f832e013c

git clone https://github.com/koadman/proxigenomics.git

###Future Work We are working on a far more user-friendly and system-agnostic replacement and hope to have a release candidate ready soon. Though is presently a work-in-progress please visit meta-sweeper if you are interested.