Pinned Repositories
BMMC_scRNAseq
ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
IMC_Denoise
IMC_Denoise: a software package to enhance Imaging Mass Cytometry.
mcmicro
Multiple-choice microscopy pipeline
multinichenetr
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
nichenetr
NicheNet: predict active ligand-target links between interacting cells
S3segmenter
SingCellaR
an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
sinto
Tools for single-cell data processing
steinbock
Dockerized multi-channel image processing framework
koetjen's Repositories
koetjen/BMMC_scRNAseq
koetjen/ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
koetjen/IMC_Denoise
IMC_Denoise: a software package to enhance Imaging Mass Cytometry.
koetjen/mcmicro
Multiple-choice microscopy pipeline
koetjen/multinichenetr
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
koetjen/nichenetr
NicheNet: predict active ligand-target links between interacting cells
koetjen/S3segmenter
koetjen/SingCellaR
an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
koetjen/sinto
Tools for single-cell data processing
koetjen/steinbock
Dockerized multi-channel image processing framework
koetjen/totalVI
koetjen/vartrix_docker
koetjen/vawk
An awk-like VCF parser