kohanlee1995

kohanlee1995's Stars

• evolutionaryscale/esm

  Language:Python1.8k207

• yangkky/Machine-learning-for-proteins

  Listing of papers about machine learning for proteins.

  1.6k213

• apeterswu/Awesome-Bio-Foundation-Models

  A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.

  20413

• McGranahanLab/mhc-hammer

  Pipeline to detect HLA disruption from WES and RNAseq data

  Language:R167

• LukszaLab/NeoantigenEditing

  Language:Python148

• actions/delete-package-versions

  Language:TypeScript37087

• ambj/MuPeXI

  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.

  Language:Python4928

• openvax/neoantigen-vaccine-pipeline

  Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

  Language:Python8025

• umccr/neoantigens

  🏺 Exploring novel tumor epitope identification

  Language:Python3510

• dpryan79/ChromosomeMappings

  This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

  24058

• andrewrech/antigen.garnish

  Language:R4713

• ML4GLand/EUGENe

  Elucidating the Utility of Genomic Elements with Neural Nets

  Language:Jupyter Notebook686

• agemagician/ProtTrans

  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

  Language:Jupyter Notebook1.2k158

• bentrevett/pytorch-seq2seq

  Tutorials on implementing a few sequence-to-sequence (seq2seq) models with PyTorch and TorchText.

  Language:Jupyter Notebook5.5k1.4k

• ml-jku/DeepRC

  DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning

  Language:Python11826

• chienyuchen/TWB-PRS

  PRS models using Taiwan Biobank data

  Language:Python82

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook2.2k532

• SyntekabioTools/HLAscan

  242

• jupyter/jupyter

  Jupyter metapackage for installation, docs and chat

  Language:Python15.1k4.2k

• tianshilu/pMTnet

  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen

  Language:Python7822

• sidhomj/DeepTCR

  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

  Language:Jupyter Notebook11841

• antigenomics/vdjdb-db

  🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

  Language:Groovy13527

• bulik/ldsc

  LD Score Regression (LDSC)

  Language:Python683350

• Chester75321/GenEpi

  A package for detecting epistasis by machine learning

  Language:Python209

• MareesAT/GWA_tutorial

  A comprehensive tutorial about GWAS and PRS

  874336

• pgxcentre/manhattan_generator

  Manhattan plot Generator

  Language:Python248

• kohanlee1995/MHCfovea

  Language:Python144

• maziarraissi/Applied-Deep-Learning

  Applied Deep Learning Course

  3.3k702

• phlippe/uvadlc_notebooks

  Repository of Jupyter notebook tutorials for teaching the Deep Learning Course at the University of Amsterdam (MSc AI), Fall 2023

  Language:Jupyter Notebook2.8k616

• jbhuang0604/awesome-computer-vision

  A curated list of awesome computer vision resources

  21.5k4.3k