Pinned Repositories
annovar
ANNOVAR
biopython
Official git repository for Biopython (originally converted from CVS)
bixtools
🐳 Dockerfiles for bioinformatics tools
covigator-ngs-pipeline
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
docassemble
A free, open-source expert system for guided interviews and document assembly, based on Python, YAML, and Markdown.
InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
jira_rest
lims
mobile-flashcards
Third React ND Project (FlashCards)
pubmed-lookup
Lookup PubMed records and make Publication objects with info about a scientific publication
koopmann's Repositories
koopmann/annovar
ANNOVAR
koopmann/biopython
Official git repository for Biopython (originally converted from CVS)
koopmann/bixtools
🐳 Dockerfiles for bioinformatics tools
koopmann/covigator-ngs-pipeline
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
koopmann/docassemble
A free, open-source expert system for guided interviews and document assembly, based on Python, YAML, and Markdown.
koopmann/InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
koopmann/jira_rest
koopmann/lims
koopmann/mobile-flashcards
Third React ND Project (FlashCards)
koopmann/pubmed-lookup
Lookup PubMed records and make Publication objects with info about a scientific publication
koopmann/reactnd-project-myreads
First React ND Project (MyReads)
koopmann/reactnd-project-would-you-rather
Second React ND Project (would-you-rather-app)
koopmann/swot
Identify email addresses or domains names that belong to colleges or universities. Help automate the process of approving or rejecting academic discounts.
koopmann/umap
uMap lets you create maps with OpenStreetMap layers in a minute and embed them in your site.
koopmann/varfish-docker-compose
Setup VarFish as using Docker Compose