korsunskylab/rcna

R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)

This package provides a native R implementation of the cna python package by Reshef and Rumker.

To get started, install rcna

library(devtools)
install_github('korsunskylab/rcna')

And follow either

1. The basic usage vignette at https://github.com/korsunskylab/rcna/blob/main/docs/demo_R.ipynb
2. The Seurat vignette at https://github.com/korsunskylab/rcna/blob/main/docs/demo_Seurat.ipynb

Next,

• Read the paper at https://www.biorxiv.org/content/10.1101/2021.04.19.440534v1.full
• Read the python code at https://github.com/immunogenomics/cna