Pinned Repositories
Bash-Oneliner
Bash Oneliner learning station. This blog will focus on bash commands for parsing biological data, which are tsv files(tab-separated values); some of the commands are for Ubuntu system maintaining. I apologize that there won't be any citation of the code, but they are probably from dear Google and Stackoverflow. Not all the code here are oneliner (if the ';' counts..). English and bash are not my first language, so... correct me anytime, tks!!
cv
[LaTeX] My academic CV
edges
Structured Edge Detection Toolbox
gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
handy
Some handy python functions for statistics, computation and plotting.
imagej_macros
Many years worth of macro scripts for high throughput scientific image processing, deconvolution and quantification
imageProcessing
Image processing libraries
lucy
Lucy-Richardson deconvolution
koryant's Repositories
koryant/Bash-Oneliner
Bash Oneliner learning station. This blog will focus on bash commands for parsing biological data, which are tsv files(tab-separated values); some of the commands are for Ubuntu system maintaining. I apologize that there won't be any citation of the code, but they are probably from dear Google and Stackoverflow. Not all the code here are oneliner (if the ';' counts..). English and bash are not my first language, so... correct me anytime, tks!!
koryant/cv
[LaTeX] My academic CV
koryant/edges
Structured Edge Detection Toolbox
koryant/gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
koryant/handy
Some handy python functions for statistics, computation and plotting.
koryant/imagej_macros
Many years worth of macro scripts for high throughput scientific image processing, deconvolution and quantification
koryant/imageProcessing
Image processing libraries
koryant/lucy
Lucy-Richardson deconvolution
koryant/matImage
Image Processing library for Matlab
koryant/skimage-tutorials
Scikit-image tutorials