make error
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Hello-
I am trying to compile MultiDFE on a server and I'm getting multiple "multiple definition" errors, as shown below:
make gcc -o MultiDFE *.c -g -O3 -lm -lgsl -lgslcblas -w /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'n_t2_evaluated' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 't2_lower' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 't2_evaluated_vec' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'n2_evaluated_vec' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'n_s_evaluated' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 's_evaluated_vec' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'data_path' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 's_evaluated_vec_file' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 's_range_file' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'n_s_evaluated_file' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'n2_evaluated_vec_file' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 't2_evaluated_vec_file' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'phase_1_dir' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'phase_2_dir' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 't2_step' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'n2_lower' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'n_n2_evaluated' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'const_pop_dir' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'neutrals_only_mode' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'verbose_mode' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'gss_n2' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'n_sfs' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'trace_level' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'nranges' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'file_label_str' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'total_density_s0' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 'allele_freq_sampled' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: error: /tmp/ccpetgrl.o: multiple definition of 's_ranges' /accre/arch/easybuild/software/Compiler/GCCcore/10.2.0/binutils/2.35/bin/ld.gold: /tmp/cc9K3ndw.o: previous definition here collect2: error: ld returned 1 exit status make: *** [MultiDFE] Error 1
How do I fix this issue?
Thanks,
Alissa
For anyone reading this, Thanos figured out how to get it to compile on my server:
gcc -O3 -o MultiDFE *.c -lm -lgsl -lgslcblas -std=c11 -w -Wall -Wextra -Wno-missing-prototypes -Wold-style-definition -Wno-unused-parameter -Wno-return-type -Wno-implicit-function-declaration -fcommon
Took us a few commands, but this one ^ worked!