kpatel427

Bioinformatics Scientist III

Children's Hospital of PhiladelphiaPhiladelphia, PA

Pinned Repositories

ahcg2017_starterpipeline
Variant calling pipeline for genomic data analysis
Language:HTML1 2 00
bash
useful bash one-liners and scripts
Language:Shell3 3 02
chipseq-snakemake
snakelike workflow for chipseq
Language:Python1 2 02
DE_analysis
Scripts to run differential expression analysis using DESeq2 package
Language:R7 2 010
GEOquery-scripts
Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets
Language:R1 2 16
multiome_analysis
Scripts for sincle cell multiome analysis
Language:R11 3 18
R-scripts
Miscellaneous R script to wrangle data and generate visualizations
Language:R16 3 012
RShiny
Working example scripts to implement small tricks in Shiny app
Language:R1 2 02
training-modules
A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
Language:HTML4 1 06
YouTubeTutorials
Language:R293 10 12130

kpatel427's Repositories

kpatel427/YouTubeTutorials
Language:R293 10 12130
kpatel427/R-scripts
Miscellaneous R script to wrangle data and generate visualizations
Language:R16 3 012
kpatel427/multiome_analysis
Scripts for sincle cell multiome analysis
Language:R11 3 18
kpatel427/DE_analysis
Scripts to run differential expression analysis using DESeq2 package
Language:R7 2 010
kpatel427/training-modules
A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
Language:HTML4 1 06
kpatel427/bash
useful bash one-liners and scripts
Language:Shell3 3 02
kpatel427/chipseq-snakemake
snakelike workflow for chipseq
Language:Python1 2 02
kpatel427/CNVkit_scripts
Language:Shell1 3 0
kpatel427/deconvolute_RNAseq
scripts that uses tools to deconvolute immune cells types from bulk RNA-Seq data
Language:R1 3 02
kpatel427/GEOquery-scripts
Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets
Language:R1 2 16
kpatel427/kpatel427
1 3 0
kpatel427/RNASeq
Language:Shell1 3 04
kpatel427/RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
Language:C++1 2 02
kpatel427/RShiny
Working example scripts to implement small tricks in Shiny app
Language:R1 2 02
kpatel427/scRNAseq
Language:R1 3 04
kpatel427/2021_datathon
Public repository for the R-Ladies Philly & JAT datathon on "Exploring judicial patterns in Philadelphia courts"
Language:HTML2 0
kpatel427/advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
Language:R2 01
kpatel427/ATRX_coverage_plot
Language:Jupyter Notebook2 0
kpatel427/create-pptc-pdx-corplots
Language:R2 0
kpatel427/kpatel427.github.io
Language:HTML3 01
kpatel427/kpatel427.github.io_backup
Language:CSS3 0
kpatel427/learningD3js
Language:HTML3 0
kpatel427/machineLearning
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kpatel427/MYCN-methods-paper
Language:R3 0
kpatel427/project-template
CHOP project template
Language:Python2 0
kpatel427/Python_Perl_scripts
Language:Python2 01
kpatel427/README_template
3 0
kpatel427/responsive-website
Language:CSS3 01
kpatel427/shiny_module
Learning about Shiny Modules
Language:R2 01
kpatel427/SurvivalAnalysis_KaplanMeier
Generating Kaplan Meier plots using gene expression data
Language:R3 01