/RetroDicty

Snakemake workflow for the analysis of retrotransposition in Dictyostelium discoideum.

Primary LanguagePython

Role of Retrotransposition in Dictyostelium discoideum

Snakemake workflow for the analysis of retrotransposition in Dictyostelium discoideum.

Usage

To run the workflow, execute the following:

$ snakemake -prj1 --use-conda

Resources

Data used in this workflow:

  • GSE56111
    • GSM1356050 (AGNA_KO): SRX498138
    • GSM1356051 (AX_2_WT): SRX498139
    • GSM1356052 (RRPC_KO): SRX498140