krassowski/complex-upset

input list of genes/SNPs/clonotypes

gt7901b opened this issue · 2 comments

gt7901b commented

Objective
how to use the complex-upset when the inputs are columns of genes such as

Control Treatment1 Treatment2
IL21 CD200 TNFRSF4
SRGN EGR2 SNX9
NFKBID SIAH2 CFLAR
IRF4 LIF NR4A1 YWHAQ
PIM3 RNF19A KDM6B
FRMD4B SLA NDFIP2
YWHAQ TNFRSF4 IL2

thanks

Code

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Context (required)

ComplexUpset version: x.x.x

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krassowski commented

Hi @gt7901b sorry I missed your question earlier. I don't understand what you are asking. Could you please clarify by providing more details/example input → expected outcome?

krassowski commented

I will close this one due to lack of follow up, I hope it worked out well. I think that an answer for your question is in #166 (comment) although it was not very clear for me originally what you were asking - sorry.

Thanks for opening the issue though!