krishbharat96
I am a recent graduate working at the Department of Neurology at UCSF. I am working on expanding a medical knowledge network known as SPOKE.
@mention https://github.com/ucsfSan Francisco, CA
Pinned Repositories
Disease_Ontology_ID_Mapper
Tool for automatically mapping IDs from prominent medical databases such as ICD10, MESH, MEDDRA etc. to Disease Ontology Identifiers
lincs
Library of Integrated Cellular Signatures L1000
Metabolomics-in-SPOKE
Creation of Metbolomic hetnets for integration into SPOKE Medical Knowledge Network
obonet
OBO-formatted ontologies → networkx (Python 3)
postpy
Module for directly obtaining and querying data from PostgreSQL dump (.sql) files
Protein-PDB-Torsional-Angle-Reader
Creates a protein pdb, reads the pdb file and looks for relevant phi-psi angles
SPOKE
SPOKE----Similarity-Ensemble-Approach
SEA Data within SPOKE
SPOKE_Integration
Integration of various Chemical and Biological Databases into the SPOKE (formerly known as Hetio) database.
UniProt_Dat_Parser
Module for easily parsing data from UniProt dat files (uniprot parser)
krishbharat96's Repositories
krishbharat96/SPOKE_Integration
Integration of various Chemical and Biological Databases into the SPOKE (formerly known as Hetio) database.
krishbharat96/postpy
Module for directly obtaining and querying data from PostgreSQL dump (.sql) files
krishbharat96/Disease_Ontology_ID_Mapper
Tool for automatically mapping IDs from prominent medical databases such as ICD10, MESH, MEDDRA etc. to Disease Ontology Identifiers
krishbharat96/Protein-PDB-Torsional-Angle-Reader
Creates a protein pdb, reads the pdb file and looks for relevant phi-psi angles
krishbharat96/SPOKE----Similarity-Ensemble-Approach
SEA Data within SPOKE
krishbharat96/UniProt_Dat_Parser
Module for easily parsing data from UniProt dat files (uniprot parser)
krishbharat96/lincs
Library of Integrated Cellular Signatures L1000
krishbharat96/Metabolomics-in-SPOKE
Creation of Metbolomic hetnets for integration into SPOKE Medical Knowledge Network
krishbharat96/obonet
OBO-formatted ontologies → networkx (Python 3)
krishbharat96/SPOKE
krishbharat96/spoon-neo4j
Augment Neo4j Browser with Zoom, DataTable and Charts