Pinned Repositories
ariba
Antimicrobial Resistance Identification By Assembly
BioinfClinic
Introduction to datawrangling with Pandas and trees with ggtree - for MDU
cgmlst-dists
🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
Coreugate
A simple cgMLST pipeline
coreuscan
A tool for downloading Core Genome MLST schemes for bacterial genomics for use with chewBBACA
datasets
Benchmark datasets for WGS analysis
phylocanvas-plugin-metadata
Display binary data adjacent to tree leaves.
phylocanvas-quickstart
Phylocanvas with core plugins preloaded for convenience.
TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
tbtamr
AMR pipeline for M. tuberculosis - the cousin of abriTAMR
kristyhoran's Repositories
kristyhoran/coreuscan
A tool for downloading Core Genome MLST schemes for bacterial genomics for use with chewBBACA
kristyhoran/Coreugate
A simple cgMLST pipeline
kristyhoran/tbtamr
AMR pipeline for M. tuberculosis - the cousin of abriTAMR
kristyhoran/BioinfClinic
Introduction to datawrangling with Pandas and trees with ggtree - for MDU
kristyhoran/ariba
Antimicrobial Resistance Identification By Assembly
kristyhoran/cgmlst-dists
🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
kristyhoran/datasets
Benchmark datasets for WGS analysis
kristyhoran/phylocanvas-plugin-metadata
Display binary data adjacent to tree leaves.
kristyhoran/phylocanvas-quickstart
Phylocanvas with core plugins preloaded for convenience.
kristyhoran/TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
kristyhoran/assemblerflow
A NextFlow pipeline assembler for bacterial genomics
kristyhoran/bioconda-recipes
Conda recipes for the bioconda channel.
kristyhoran/chewbbaca_singularity
kristyhoran/dash-phylogeny
Interactive phylogeny trees with Dash
kristyhoran/LisSero
In silico serotype prediction for Listeria monocytogenes
kristyhoran/maskrc-svg
Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG
kristyhoran/multi_assembler_singularity
kristyhoran/nextflow-shovill
🔗 A simple nextflow of shovill for running multiple samples at once on multiple cores computer or HPC (i.e. slurm, sge,...)
kristyhoran/pan-zoom
Pan and zoom events for everybody
kristyhoran/phaster_scripts
Small utility script to submit genomes to PHASTER for phage detection
kristyhoran/phylocanvas
kristyhoran/playground
Trying out ideas
kristyhoran/PySingscore
Python3 Implementation of SingScore
kristyhoran/sakai-vue
kristyhoran/seroba
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
kristyhoran/shovill
A shovill singularity recipe
kristyhoran/shovill-1
Faster SPAdes assembly of Illumina reads
kristyhoran/tbdb
Standard database for the TBProfiler tool
kristyhoran/TreeToReads
Pipeline to generate NGS reads from a phylogeny
kristyhoran/workflow-demo