krol33
My current work focuses on research in Genetics, Molecular Genomics, Molecular Biology of grapevine downy mildew.
INRAEBordeaux
Pinned Repositories
analyse_vcf
analyses_vcf
bbb-install
BASH script to install BigBlueButton in 30 minutes.
bbb-recorder
BigBlueButton recorder using puppeteer to export as webm or mp4 file & Live RTMP broadcasting
bioawk
BWK awk modified for biological data
BioinfoJournalClub
Bioinformatics Journal Club
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
breakdancer
SV detection from paired end reads mapping
circlator
A tool to circularize genome assemblies
culebrONT
A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.
datasciencecoursera
datasciencecoursera
krol33's Repositories
krol33/analyse_vcf
analyses_vcf
krol33/bbb-install
BASH script to install BigBlueButton in 30 minutes.
krol33/bbb-recorder
BigBlueButton recorder using puppeteer to export as webm or mp4 file & Live RTMP broadcasting
krol33/bioawk
BWK awk modified for biological data
krol33/BioinfoJournalClub
Bioinformatics Journal Club
krol33/bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
krol33/breakdancer
SV detection from paired end reads mapping
krol33/circlator
A tool to circularize genome assemblies
krol33/culebrONT
A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.
krol33/datasciencecoursera
datasciencecoursera
krol33/datasharing
The Leek group guide to data sharing
krol33/FAIR_formation
krol33/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
krol33/gatk
Official code repository for GATK versions 4 and up
krol33/genomicspapers
The Leek group guide to genomics papers
krol33/gridss
GRIDSS: the Genomic Rearrangement IDentification Software Suite
krol33/HaploSync
Tools for haplotype-wise reconstruction of pseudomolecules
krol33/jbrowse-components
Monorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, and core plugins. To customize behaviors, write an in-house plugin.
krol33/JBrowseR
R interface to the JBrowse 2 Linear Genome View.
krol33/krol33
Config files for my GitHub profile.
krol33/mapping_pipeline
Mapping pipeline for data generated using Arima-HiC
krol33/mitogenoem
krol33/MitoSeek
Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing
krol33/popgen
Population genetics analyses
krol33/RattleSNP
snakemake workflow for mappind single/paired datas
krol33/readingpapers
A guide to reading scientific papers
krol33/rpackages
R package development - the Leek group way!
krol33/sashimiplot
A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data
krol33/super-umbrella
krol33/vcfR_documentation
Documentation for vcfR