Pinned Repositories
abricate
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
Bio-IT-Scripts
biocode
Bioinformatics code libraries and scripts
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
EDirectCookbook
FastANI
Fast Whole-Genome Similarity (ANI) Estimation
homoplasyFinder
A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
Kraken_db_install_scripts
Updated Kraken DB install scripts to cope with new-ish NCBI structure
legen_pipeline
Lactobacillus Evolutionary Genomics Pipeline
MrBayes
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
ksanjeetsinha's Repositories
ksanjeetsinha/abricate
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
ksanjeetsinha/Bio-IT-Scripts
ksanjeetsinha/biocode
Bioinformatics code libraries and scripts
ksanjeetsinha/bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
ksanjeetsinha/EDirectCookbook
ksanjeetsinha/FastANI
Fast Whole-Genome Similarity (ANI) Estimation
ksanjeetsinha/homoplasyFinder
A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
ksanjeetsinha/Kraken_db_install_scripts
Updated Kraken DB install scripts to cope with new-ish NCBI structure
ksanjeetsinha/legen_pipeline
Lactobacillus Evolutionary Genomics Pipeline
ksanjeetsinha/MrBayes
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
ksanjeetsinha/nanostat
Create statistic summary of an Oxford Nanopore read dataset
ksanjeetsinha/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
ksanjeetsinha/pgap
NCBI Prokaryotic Genome Annotation Pipeline
ksanjeetsinha/proclasp
Classification of prokaryotic genomes on the species level
ksanjeetsinha/progenomics
A toolkit for prokaryotic comparative genomics
ksanjeetsinha/qiime
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
ksanjeetsinha/SHIVGAMI
SHIVGAMI is a tool, which run blastX process by assembling the CPU cores from avaialble Linux computing units.
ksanjeetsinha/spades
SPAdes Genome Assembler
ksanjeetsinha/tidytypes
Functions to Download Type Strain Names
ksanjeetsinha/to-gff
Convert .gbk or .embl to .gff (and optionally .fa) (required for QUAST)