Pinned Repositories
advent-of-code-2023
Advent of Code 2023
aoc-2019-rust
Advent of Code 2019
mybiocaddie
test for biocaddie-gym
pumpkin-py
Semantic similarity in python with bitmaps
udemy
koza
Data transformation framework for LinkML data models
kshefchek's Repositories
kshefchek/advent-of-code-2023
Advent of Code 2023
kshefchek/aoc-2019-rust
Advent of Code 2019
kshefchek/pumpkin-py
Semantic similarity in python with bitmaps
kshefchek/udemy
kshefchek/advent-of-code-2018
kshefchek/biocontext
JSON-LD Contexts for Bioinformatics Data
kshefchek/biolink-api
API for linked biological knowledge
kshefchek/biolink-model
Schema and generated objects for biolink data model and upper ontology
kshefchek/DeepLearningForNLPInPytorch
An IPython Notebook tutorial on deep learning for natural language processing, including structure prediction.
kshefchek/DipperCache
Prefetch tens of gigs of files & provide more robust update info downstream
kshefchek/EdgeNormalization
A service for producing relationships compliant with the biolink model
kshefchek/fogo
kshefchek/gitter-log
Utility for fetching gitter chat data (messages, metadata)
kshefchek/kgx
KGX is a Python library for exchanging Knowledge Graphs
kshefchek/monarch-ontology
Top level monarch importer ontology
kshefchek/monarch-ui
A modern web UI for revealing and understanding Monarch Initiative information.
kshefchek/monarch_ontology_data
Repo for generating monarch data dependencies like the one used by exomiser
kshefchek/NameResolution
kshefchek/ncbitaxon
Build for NCBITaxon
kshefchek/nlp-eval
Evaluation of NER approaches in Monarch
kshefchek/NodeNormalization
Service that produces Translator compliant nodes given a curie
kshefchek/ontobio
python library for working with ontologies and ontology associations
kshefchek/phenogrid
The phenogrid widget
kshefchek/Plater
kshefchek/RareCrowds
Package to serve public and freely-available data from rare disease patients.
kshefchek/rclone
"rsync for cloud storage" - Google Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Wasabi, Google Cloud Storage, Yandex Files
kshefchek/svart
API for use in representing and manipulating genomic variation
kshefchek/terraref-datasets
Repository for code and small datasets derived from the TERRA REF program
kshefchek/upheno-dev
Framework for the automated construction of uPheno 2.0
kshefchek/wtfpython
What the f*ck Python? 😱