Pinned Repositories
galaxy
Data intensive science for everyone.
cloudlaunch-cli
CLI client for CloudLaunch
Experiments
Scripts, Plans, and Playbooks needed to run benchmarking experiments
galaxy
Data intensive science for everyone.
galaxy-cvmfs-csi-helm
A Helm chart deploying CVMFS-CSI on Kubernetes with a default configuration for Galaxy repositories
galaxy-helm
Minimal setup required to run Galaxy under Kubernetes
galaxykubeman-helm
Helm chart for Galaxy KubeMan used for deploying Galaxy alongside its dependencies (NFS, CVMFS, and CloudMan)
usage-metering
Scripts and queries for inspecting Galaxy usage data.
ksuderman's Repositories
ksuderman/Experiments
Scripts, Plans, and Playbooks needed to run benchmarking experiments
ksuderman/galaxy
Data intensive science for everyone.
ksuderman/galaxy-docker-k8s
An Ansible playbook for building a Galaxy container for Kubernetes.
ksuderman/galaxykubeman-helm
Helm chart for Galaxy KubeMan used for deploying Galaxy alongside its dependencies (NFS, CVMFS, and CloudMan)
ksuderman/galaxy-cvmfs-csi-helm
A Helm chart deploying CVMFS-CSI on Kubernetes with a default configuration for Galaxy repositories
ksuderman/galaxy-helm
Minimal setup required to run Galaxy under Kubernetes
ksuderman/usage-metering
Scripts and queries for inspecting Galaxy usage data.
ksuderman/anvil-galaxy-tests
Continuous Integration for AnVIL Galaxy.
ksuderman/anvil-settings
Simple prototype for the AnVIL configuration form
ksuderman/AnVIL-Tasks
An empty repository to host the AvVIL Tasks project.
ksuderman/Benchmarks
Consolidate results from the RNA-Seq, Variant Calling, and Single Cell benchmarks
ksuderman/bioblend
A Python library for interacting with Galaxy and CloudMan APIs
ksuderman/cloudman-boot
Build mechanism for cloudman-boot Docker image
ksuderman/DataBiosphere-leonardo
Fork of Leonardo for preparing draft pull requests.
ksuderman/galaxy-hub
Galaxy Community Hub
ksuderman/galaxy-k8s-boot
ksuderman/galaxy-maintenance
A Docker image containing the Galaxy packages needed to parse the config file and talk to the database.
ksuderman/galaxy_tool_dependencies
A place to publish artifacts that seldom change and are used as dependencies by other Galaxy tools.
ksuderman/galaxy_tools_corenlp
ksuderman/GalaxyEmbeddings
Create embeddings for use in ChatGXY
ksuderman/github-actions-test
Repository used to test GitHub actions
ksuderman/gxlogfix
Replace greedy string formatting in logging statements.
ksuderman/gxy.io
The gxy.io link shortening service
ksuderman/helm-charts
A repository of packaged Helm charts.
ksuderman/helm_charts
Helm repository for testing and development
ksuderman/k8s-ansible-playbooks
Playbooks for configuring Kubernetes clusters for Galaxy.
ksuderman/kshims
A simple shim for kubectl and helm
ksuderman/planemo
Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
ksuderman/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
ksuderman/training-material
A collection of Galaxy-related training material