ksw9

Asst Prof in Epidemiology, U of Utah evolution | epidemiology | environmental change

University of Utah

Pinned Repositories

cocci-call
Language:Nextflow00
hap.py
Haplotype VCF comparison tools
Language:C++00
ksw9.github.io
Evo-Epi Laboratory
Language:SCSS10
mtb-call
M. tuberculosis variant identification (deprecated 2023). Use: https://github.com/ksw9/mtb-vars
Language:Shell20
mtb-call2
Pipeline for M. tuberculosis variant identification from short-read data
Language:Nextflow01
mtb-within-host
Signatures of transmission in within-host M. tuberculosis variation
Language:R00
mtb_pipeline
Mtb variant calling pipeline (bwa/GATK)
Language:Shell1 1 00
mtb_variant_identification
Code for Mtb variant calling performance analysis.
Language:Shell6 2 30
opv-consensus
00
tb-prisons-americas
Code accompanying: The escalating tuberculosis crisis in Central and South American prisons
00

ksw9's Repositories

ksw9/mtb_variant_identification
Code for Mtb variant calling performance analysis.
Language:Shell6 2 30
ksw9/mtb-call
M. tuberculosis variant identification (deprecated 2023). Use: https://github.com/ksw9/mtb-vars
Language:Shell20
ksw9/ksw9.github.io
Evo-Epi Laboratory
Language:SCSS10
ksw9/mtb_pipeline
Mtb variant calling pipeline (bwa/GATK)
Language:Shell1 1 00
ksw9/cocci-call
Language:Nextflow00
ksw9/hap.py
Haplotype VCF comparison tools
Language:C++00
ksw9/mtb-call2
Pipeline for M. tuberculosis variant identification from short-read data
Language:Nextflow01
ksw9/mtb-within-host
Signatures of transmission in within-host M. tuberculosis variation
Language:R00
ksw9/opv
OPV consensus sequence analysis
0 1 00
ksw9/opv-consensus
00
ksw9/tb-prisons-americas
Code accompanying: The escalating tuberculosis crisis in Central and South American prisons
00
ksw9/TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
Language:Python00