This Project Pythia Cookbook covers working with various sources of ocean biogeochemistry data, including Community Earth System Model (CESM) output and observational data.
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Lev Romashkov, Kristen Krumhardt
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You can either run the notebook using Binder or on your local machine.
The simplest way to interact with a Jupyter Notebook is through
Binder, which enables the execution of a
Jupyter Book in the cloud. The details of how this works are not
important for now. All you need to know is how to launch a Pythia
Cookbooks chapter via Binder. Simply navigate your mouse to
the top right corner of the book chapter you are viewing and click
on the rocket ship icon, (see figure below), and be sure to select
“launch Binder”. After a moment you should be presented with a
notebook that you can interact with. I.e. you’ll be able to execute
and even change the example programs. You’ll see that the code cells
have no output at first, until you execute them by pressing
{kbd}Shift+{kbd}Enter. Complete details on how to interact with
a live Jupyter notebook are described in Getting Started with
Jupyter.
If you are interested in running this material locally on your computer, you will need to follow this workflow:
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Clone the
https://github.com/ProjectPythia/ocean-bgc-cookbookrepository:git clone https://github.com/ProjectPythia/cookbook-example.git
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Move into the
ocean-bgc-cookbookdirectorycd ocean-bgc-cookbook -
Create and activate your conda environment from the
environment.ymlfileconda env create -f environment.yml conda activate ocean-bgc-cookbook-dev
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Move into the
notebooksdirectory and start up Jupyterlabcd notebooks/ jupyter lab