kuanchiun

kuanchiun's Stars

• yutongo/TIGON

  Language:Jupyter Notebook313

• yuehhua/CDGRNs.jl

  Official Implementation of Context-Dependent Gene Regulatory Networks (CDGRNs)

  Language:Julia5

• drieslab/Giotto

  Spatial omics analysis toolbox

  Language:R26198

• TGAC/KAT

  The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

  Language:C++20652

• s-andrews/FastQC

  A quality control analysis tool for high throughput sequencing data

  Language:Java44085

• Benson-Genomics-Lab/TRF

  Tandem Repeats Finder: a program to analyze DNA sequences

  Language:C15326

• stuart-lab/signac

  R toolkit for the analysis of single-cell chromatin data

  Language:R32788

• marbl/verkko

  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

  Language:Python29529

• lh3/dipcall

  Reference-based variant calling pipeline for a pair of phased haplotype assemblies

  Language:JavaScript969

• Teichlab/bbknn

  Batch balanced KNN

  Language:Python14723

• dpeerlab/SEACells

  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data

  Language:Jupyter Notebook14527

• theislab/anndata2ri

  Convert between AnnData and SingleCellExperiment

  Language:Python12716

• cellgeni/sceasy

  A package to help convert different single-cell data formats to each other

  Language:R37755

• benson8902/Research

  Language:Jupyter Notebook3

• COMBINE-lab/forseti

  Language:Python5

• liuqivandy/aKNNO

  Language:HTML3

• ridgerchu/matmulfreellm

  Implementation for MatMul-free LM.

  Language:Python2.9k182

• mojaveazure/seurat-disk

  Interfaces for HDF5-based Single Cell File Formats

  Language:R14748

• google-deepmind/alphafold

  Open source code for AlphaFold.

  Language:Python12.6k2.2k

• juexinwang/scGNN

  scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks

  Language:Python13440

• welch-lab/MultiVelo

  Multi-omic velocity inference

  Language:Python10612

• marbl/CHM13

  The complete sequence of a human genome

  91599

• ktan8/nanopore_telomere_basecall

  Language:Perl143

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.9k599

• theislab/scvelo

  RNA Velocity generalized through dynamical modeling

  Language:Python414102

• nanoporetech/bonito

  A PyTorch Basecaller for Oxford Nanopore Reads

  Language:Python394121

• eamid/trimap

  TriMap: Large-scale Dimensionality Reduction Using Triplets

  Language:Python30220

• bowang-lab/DeepVelo

  Language:Python469

• jsxlei/SCALE

  Single-cell ATAC-seq analysis via Latent feature Extraction

  Language:Python9919

• kenjihiranabe/The-Art-of-Linear-Algebra

  Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"

  Language:PostScript17.9k2.2k