kuanlinhuang's Stars
pditommaso/awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
common-workflow-language/common-workflow-language
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
dhbradshaw/ml-for-genomics
Lists open source machine learning projects solving genomic or molecular biology problems.
AdamDS/vcf2ensembl
Convert variants from VCF format to Ensembl format.
tpq/exprso
[DEPRECATED] An R package to rapidly build and deploy supervised machine learning workflows
mdozmorov/gwas2bed
Extracting disease-specific genomic coordinates from GWAS catalog
danielecook/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
brentp/vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
donnemartin/data-science-ipython-notebooks
Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.
zwdzwd/transvar
TransVar - multiway annotator for precision medicine
griffithlab/GenVisR
Genome data visualizations
macarthur-lab/clinvar
This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.
samtools/htslib
C library for high-throughput sequencing data formats
bose-lab/ParsSNP
Related to the Kumar et al, 2016 study
alxndrkalinin/awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
dockstore/dockstore
An app store for scientific workflows, tools, notebooks, and services
tflearn/tflearn
Deep learning library featuring a higher-level API for TensorFlow.
dgrtwo/rpanama
The Panama Papers offshore leaks database in R
cran/mclust
:exclamation: This is a read-only mirror of the CRAN R package repository. mclust — Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation. Homepage: https://mclust-org.github.io/mclust/
sentisci/fheatmap
R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, coloring of row/column side tree with respect to the number of user defined cuts in the cluster, add annotations to both columns and rows, option to input annotation palette for tree and column annotations and multiple parameters to modify aesthetics (style, color, font) of texts in the plot.
macarthur-lab/gene_lists
List of gene lists for genomic analyses.
macarthur-lab/igv_utils
utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
IssamLaradji/NeuralNetworks
Multi-layer Perceptron
Bioconductor/GoogleGenomics
[DEPRECATED] An R package for Google Genomics API queries.
googlegenomics/pipelines-api-examples
Examples for the Google Genomics Pipelines API.
torch/distro
Torch installation in a self-contained folder
isb-cgc/examples-R
Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.
isb-cgc/ISB-CGC-Webapp
ISB CGC Webapp
Clinical-Genomics/genmod
Annotate models of genetic inheritance patterns in variant files (vcf files)
drmjc/metaGSEA
An R package for I/O of GenePattern datatypes, and running meta-GSEA analyses