Li Ding's Lab

Li Ding's Lab at the Washington University School of Medicine

St. Louis, MO, USA

Pinned Repositories

BICSEQ2
BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA
Language:Shell16 18 65
BreakPointSurveyor
A comprehensive pipeline to analyze and visualize structural variants
Language:Shell20 18 03
CharGer
Characterization of Germline variants
Language:Python98 18 3737
GenomeVIP
Language:PHP20 13 25
hotspot3d
3D hotspot mutation proximity analysis tool
Language:Perl48 21 2026
msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
Language:C++132 24 4254
MuSiC2
identifying mutational significance in cancer genomes
Language:Perl61 22 1520
PanCan_snATAC_publication
Language:Jupyter Notebook19 11 95
PanCanAtlasGermline
Language:R44 25 314
somaticwrapper
Detect somatic variants from tumor and normal WGS/WXS data
Language:Perl19 20 19

Li Ding's Lab's Repositories

ding-lab/PanCan_snATAC_publication
Language:Jupyter Notebook19 11 95
ding-lab/somaticwrapper
Detect somatic variants from tumor and normal WGS/WXS data
Language:Perl19 20 19
ding-lab/mushroom
A computational tool for identification of 3D multi-modal spatial neighborhoods
Language:Jupyter Notebook13 10 11
ding-lab/ST_subclone_publication
Code for spatial subclone paper
Language:R13 10 44
ding-lab/VirusScan
VirusScan Pipeline
Language:Perl11 12 07
ding-lab/morph
Language:Python9 11 11
ding-lab/normal_mouse_kidney_scripts
Language:R5 9 21
ding-lab/germlinewrapper
detect germline variants from normal samples
Language:Perl4 19 03
ding-lab/SomaticSV
CWL wrapper for Manta 1.4.0 and simple filter
Language:Shell3 18 01
ding-lab/importGDC
Automated download of CPTAC3 data from GDC
Language:Shell2 19 0
ding-lab/ASE_analysis
Language:R1 9 0
ding-lab/CromwellRunner
Scripts for managing Cromwell workflows
Language:Shell1 19 00
ding-lab/druggability_databases
Language:Python1 11 00
ding-lab/FSAudit
Filesystem audit visualization
Language:Shell1 17 0
ding-lab/Fusion_hg38
Language:Shell1 11 7
ding-lab/GDC.case.discover
Obtain submitted reads and clinical info associated with CPTAC3 cases
Language:Shell1 19 02
ding-lab/Intratumor_heterogeneity
Language:R1 9 0
ding-lab/pecgs-pipeline
Language:Common Workflow Language1 10 12
ding-lab/spatial_driver_co-detection_paper
Code for spatial driver co-detection paper
Language:R11
ding-lab/mnp_filter
Language:Python0 20 10
ding-lab/co-evolution_myeloma_-2021
ding-lab/CPTAC_PanCan_Signature_analysis
Language:R9 0
ding-lab/druggability
Language:Python10 2
ding-lab/Immune_snATAC
Language:R9 0
ding-lab/LR_SV_pipe
Call SVs from long-read sequencing data
Language:Python10 0
ding-lab/monopogen_pipeline
Language:Shell10 0
ding-lab/ONTsplice
pipeline for processing ONT RNA-Seq data
Language:Perl9 0
ding-lab/rcwrapper
calculate vaf for variants based on bam
Language:Perl11 0
ding-lab/SenNet_liver
Language:HTML
ding-lab/WUDocker
Utilities for launching docker in various Washington University environments
Language:Shell19 02