ding-lab/msisensor

Issues

• feature request: ignore duplicate-marked reads

  #57 opened 4 years ago by anoronh4
  1

• bam files after realignment & output_dis file

  #56 opened 4 years ago by bsgilgi
  0

• The MSI loci in output.prefix_germline file

  #52 opened 5 years ago by yumenxx
  1

• Reference genome issues in msisensor and number of somatic sites prediction in msisensor2

  #51 opened 5 years ago by Manonanthini
  3

• Get location of total sites

  #49 opened 5 years ago by flora0177
  1

• MSI score greater than 1

  #55 opened 4 years ago by shanshenbing
  0

• msisensor2 requires write permission to the models directory

  #53 opened 5 years ago by kmavrommatis
  1

• whether to use deduplicated bam

  #29 opened 6 years ago by coolbubu
  14

• Tumor-only method

  #21 opened 6 years ago by EgirardBioinfo
  23

• msisensor on whole exome

  #46 opened 5 years ago by patidarr
  1

• failed to open output files to write

  #43 opened 5 years ago by IvantheDugtrio
  2

• How to generate the plot distribution using msisensor output file?

  #26 opened 5 years ago by SaranyaGLS
  6

• Bed file not loading

  #45 opened 5 years ago by PriyaMilne
  1

• No matched normal

  #16 opened 6 years ago by crutching
  6

• How msisensor deal with soft clipping reads?

  #44 opened 5 years ago by ShenWei-wei
  1

• Tagging release 0.6

  #42 opened 5 years ago by ckandoth
  3

• MSIsensor，how to classify the MSI high and MSI low？

  #11 opened 6 years ago by anything4share
  6

• only part of BED file loaded/analysed

  #28 opened 5 years ago by preciserobot
  3

• How to prepare correct bed file for msisensor msi?

  #39 opened 5 years ago by guodudou
  2

• Error "Same reference genome file should be used in both 'msisensor scan' and 'msisensor msi' steps!!!"

  #38 opened 5 years ago by sclan
  2

• Microsatellite loci for hg38

  #40 opened 5 years ago by audyavar
  3

• msi fails with exit code 139 when encountering contigs not in bam/bai

  #1 opened 6 years ago by genuinekale
  5

• can't find the description of the result file : output.prefix: msi score output

  #32 opened 6 years ago by zhangj1115
  3

• How difference value is calculated

  #31 opened 6 years ago by pengyuguai
  1

• minimal comentropy threshold

  #33 opened 6 years ago by jimlund
  1

• error while loading shared libraries

  #30 opened 6 years ago by andhena
  1

• virtual memory error - scan ref genome

  #22 opened 6 years ago by arorarshi
  4

• the relationship of -l -p -m

  #8 opened 6 years ago by liuyixiao
  1

• read count distribution

  #23 opened 6 years ago by Jemkon
  2

• MSI score Plot

  #20 opened 6 years ago by Jemkon
  2

• Bioconda package

  #18 opened 6 years ago by micknudsen
  3

• msisensor msi -c [int] does not work

  #2 opened 6 years ago by mlebeur
  2

• cannot 'make' installation with samtools 1.3.1

  #9 opened 6 years ago by stevekm
  2

• Single tumor BAM doesnt work.....

  #17 opened 6 years ago by Jemkon
  1

• Error: 'scan' keeps getting 'killed'

  #10 opened 6 years ago by stevekm
  2

• what is homopolymer size?

  #13 opened 6 years ago by qingping12
  1

• MSI scroe?

  #7 opened 6 years ago by qingping12
  2

• query about bam

  #4 opened 6 years ago by nordhuang
  1

• Running on WGS

  #6 opened 6 years ago by Rashesh7
  7

• Zero scoring returns empty files

  #12 opened 6 years ago by morganbye
  2

• 5-marker or 7-marker

  #5 opened 7 years ago by kevin199011
  0

• MSIsensor using variable numbers of positions

  #3 opened 7 years ago by RichardCorbett
  0