ding-lab/msisensor

bam files after realignment & output_dis file

bsgilgi opened this issue · 0 comments

bsgilgi commented

Hello,
Thank you for the msisensor tool.
I have 2 questions:

  1. I am using bam files after the GATK workflow. Is this a valid input for msisensor?
  2. I have a question regarding the output_dis file (I am using v 0.6).
    I thought that this file has the lengths of the microstaellites. However it always has 100 values for T and for N.
    What are these values?

Thank you