Single tumor BAM doesnt work.....
Jemkon opened this issue · 1 comments
Jemkon commented
Hello,
Thank you for sharing such a nice tool. I have tumor BAM files and I would like to do MSI analysis on them using msisensor tool. But I am unable to run the tool using tumor BAM. It sys "Please provide valid format normal bam file !". Can I run the tool just using tumor BAM?
I have also tried on test dataset provided. But got the same error.
msisensor msi -d test/example.microsate.sites -t test/example.tumor.bam -o output.tumor.prefix
Many thanks.
Beifang commented
Hi Jemkon, I guess you are still using msisensor v0.2. msisensor can detect msi status for tumor only data from version 0.3. So, please clone the v0.3 code from github repo and run again. please let us know if there is still any problem. thx, -beifang