Pinned Repositories
DevelopingProducts
dxCompiler
WDL and CWL compiler for the DNAnexus platform
dxda
CLI tool to manage the download of large quantities of files from DNAnexus
dxfuse
FUSE filesystem for the DNAnexus storage system
dxWDL
Workflow Description Language compiler for the DNAnexus platform
gatk
Official code repository for GATK versions 4 and up
lacer
Lacer: Accurate Base Quality Score Recalibration using Linear Algebra
MIPGEN
One stop MIP design and analysis
MSIsensor_dx
Implementation of MSIsensor for DNAnexus platform
RAP
sclan's Repositories
sclan/MSIsensor_dx
Implementation of MSIsensor for DNAnexus platform
sclan/DevelopingProducts
sclan/dxCompiler
WDL and CWL compiler for the DNAnexus platform
sclan/dxda
CLI tool to manage the download of large quantities of files from DNAnexus
sclan/dxfuse
FUSE filesystem for the DNAnexus storage system
sclan/dxWDL
Workflow Description Language compiler for the DNAnexus platform
sclan/gatk
Official code repository for GATK versions 4 and up
sclan/lacer
Lacer: Accurate Base Quality Score Recalibration using Linear Algebra
sclan/MIPGEN
One stop MIP design and analysis
sclan/RAP
sclan/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
sclan/shiny-examples
sclan/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
sclan/wdl
Workflow Description Language - Specification and Implementations
sclan/workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
sclan/ximmer
Ximmer is a system for CNV calling on exome and targeted genomic sequencing