ding-lab/msisensor

MSI scroe?

qingping12 opened this issue · 2 comments

MSIsensor judge MSI-H,MSI-L,MSS by MSI score,>3.5 belong to MSI <3.5 belong to MSS.
I want to know the MSI score is equal to the % from the result below?
Total_Number_of_Sites Number_of_Somatic_Sites %
1314 15 1.14
and the total_number_of_sites mean the total MS sites in my bedfile?

the MS sites in my bedfile which was covered at least 20 reads in tumor and normal sample?MSI score is equal to number_of_sites/total_number_of_sites?and can you explain what every column mean for MSI-H,MSI-L,(five marker,seven marker).thank you
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