kukutec/qbiome

Microbiome Analysis Powered By Recursive Quasi-species Networks: Uncovering rules of organization, competition, succession and exploitation

Qbiome

Info:	Draft link will be posted here
Author:	ZeD@UChicago <zed.uchicago.edu>
Description:	Application of quasinets (https://pypi.org/project/quasinet/) for microbiome analysis for learning rules of organization, maturation, competition and succession in microbiome ecosystems.
Documentation:	https://zeroknowledgediscovery.github.io/qbiome/qbiome/index.html

Usage:

import qbiome
from qbiome.data_formatter import DataFormatter
from qbiome.quantizer import Quantizer
from qbiome.qnet_orchestrator import QnetOrchestrator
from qbiome.forecaster import Forecaster