Tool to create and query files containing multiple wiggle plots.
It accepts WIG and BEDGRAPH file formats.
Example:
mwiggle create mytest.mw *.bedgraph -t 9060 -a NCBI37 -d "My test tracks"
run mwiggle in the command line for help
make
make test
add to the path
export PATH=pwd/bin:$PATH
add libs to the path
export LD_LIBRARY_PATH=pwd/lib:$LD_LIBRARY_PATH
MW support has been added from release/eg/22
eg-web-common/modules/Bio/EnsEMBL/GlyphSet/mw.pm eg-web-common/modules/EnsEMBL/Web/ImageConfig.pm
add path to the mwiggle installation in SiteDefs.pm, e.g $SiteDefs::MWIGGLE_DIR= '/usr/local/mwiggle';
configure MW tracks in species ini files, e.g
[ENSEMBL_INTERNAL_MW_SOURCES]
PhyloCSF = transcript
[PhyloCSF]
source_name = PhyloCSF
source_type = MW
display = tiling
description = PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions ( Study 21685081 )
source_url = /nfs/public/rw/ensembl/data/vectorbase/PhyloCSF.mw
score_colour = coral
strand = b
track_order = [1 3 5 0 2 4 6]
track_colour = [burlywood1 burlywood1 burlywood1 burlywood1 burlywood1 burlywood1 chocolate3]