/macpep-scylladb

Primary LanguagePython

build

MaCPepDB - Mass Centric Peptide Database

Digests proteins stored in FASTA / Uniprot textfiles and inserts the resulting peptides and proteins into a ScyllaDB NoSQL cluster.

Getting started

Running with local docker compose Scylla cluster

  1. Start Docker
  2. make up
  3. Wait for all scylla nodes to be UN with make status
  4. Interact with app container make app
    • cd app
    • poetry install
    • poetry run x to run the CLI