/vGWAS

Variance Heterogeneity Genome-wide Association Study - Reimplementation

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vGWAS

Build Status

Variance Heterogeneity Genome-wide Association Study - Reimplementation

This repository is a reimplementation from the original vGWAS R package from Xia Shen.

see the original publication Inheritance Beyond Plain Heritability: Variance-Controlling Genes in Arabidopsis thaliana

Installation

R specific installation prerequisites

install.packages("devtools")
install.packages("knitr")
install.packages("hglm")
install.packages("dglm")

Third install vGWAS package from github using the devtools package.

library(devtools)
install_github("kullrich/vGWAS", build_vignettes = TRUE, dependencies = FALSE)

Vignettes

These vignettes introduce distIUPAC

library(vGWAS)
vignette("vGWAS")