kumar-physics

Physicist doing research in structural biology

UCONN HealthUSA

Pinned Repositories

af_analysis
Chemical shift prediction for alpha fold entries
Language:Python0 2 00
amide-aromatic
Amide-aromatic interaction in proteins
Language:Jupyter Notebook00
aromatic_interactions
Analyze the interaction between two aromatic rings
Language:Python1 2 00
bayesian-validation
NMR structure validation using bayesian methods
Language:Python00
BioJava
Language:Java00
biopython
My fork of the official Biopython repository, used for experimental branches etc
Language:Python0 2 00
InterfacePrediction
Interface prediction using EPPIC entropy scores
Language:Python10
PyBMRB
BMRB data visualization tools using python Plotly
Language:Python1 2 00
pymol-plugin
PyMOL plugin to load EPPIC protein-protein interfaces
Language:Python11
RBMRB
R libraries to fetch and visualize BMRB data
Language:R0 2 00

kumar-physics's Repositories

kumar-physics/aromatic_interactions
Analyze the interaction between two aromatic rings
Language:Python1 2 00
kumar-physics/PyBMRB
BMRB data visualization tools using python Plotly
Language:Python1 2 00
kumar-physics/af_analysis
Chemical shift prediction for alpha fold entries
Language:Python0 2 00
kumar-physics/amide-aromatic
Amide-aromatic interaction in proteins
Language:Jupyter Notebook00
kumar-physics/bayesian-validation
NMR structure validation using bayesian methods
Language:Python00
kumar-physics/RBMRB
R libraries to fetch and visualize BMRB data
Language:R0 2 00
kumar-physics/BMRB-Histogram
Chemical shift histograms generated from BMRB database
Language:JavaScript1
kumar-physics/bmrb-validation
Tools to validate/analyze Chemical shift data in NMR-STAR data format
kumar-physics/BMRBCuration
Analyze and remediate incorrect ambiguity codes in BMRB
2 0
kumar-physics/BMRBDataRemidiation
Validate BMRB entries and clean up the database
Language:Python2 0
kumar-physics/BMRBTranslator
Translates NMR Exchange Format(NEF) to NMR-STAR format
Language:Roff1
kumar-physics/BMRBVisualization
BMRB data visualization using Plotly
Language:Python1
kumar-physics/csv2nmrstar
Generate NMR-STAR files from predicted chemical shifts in CSV format
Language:Python2 0
kumar-physics/general-scripts
Some general scrips written in sql, python and R for data mining
Language:R4 0
kumar-physics/GRch38to37
Convert coordinates from GRch38 to GRch37
Language:Perl2 01
kumar-physics/metabolites-analysis
Unnormalized metabolites data analysis
2 0
kumar-physics/NEF
NMR Exchange Format official specification
Language:Python2 0
kumar-physics/NEFtoNMR-STAR
Translate NMR Exchange Format (NEF) to NMR-STAR Format
Language:Python2 0
kumar-physics/NMR-STAR-Converter
NMR-STAR version converter
Language:Python2 02
kumar-physics/nmr-star-dictionary
The official NMR-STAR dictionary in use by the BMRB.
2 0
kumar-physics/NMR-Validation
NMR Reastraint validation project for wwPDB
Language:Python2 0
kumar-physics/pi
Raspberry pi project codes
Language:Python2 0
kumar-physics/Posters
Confrence posters
2 0
kumar-physics/PyBMRB_old
Visualiztioan and Validation tools from BMRB
Language:Roff
kumar-physics/RamachandranPlot
generate Ramachandran plot from cif file
Language:Python2 0
kumar-physics/RBMRB-Doc
Documentation for RBMRB library
Language:HTML2 0
kumar-physics/RestraintsValidation
NMR restraints validation
Language:HTML2 0
kumar-physics/scipy_proceedings
Tools used to generate the SciPy conference proceedings
Language:Python
kumar-physics/SPARKYtoNMRSTAR
NMR-STAR support for NMRFAM-SPARKY
Language:Python
kumar-physics/workflow
DAGMan workflow for NMR data proccessing
2 0