kundajelab/chipseq_pipeline

Can't download hg19 genome data

tfchipchip opened this issue · 2 comments

tfchipchip commented

Hello,

There is an issue downloading hg19 genome data. Stuck at "HTTP request sent, awaiting response..."
hg38 can be downloaded.

Can you please solve? Thanks!

leepc12 commented

Can you post a full log here?

I think it's a temporary file hosting problem on UCSC. Do you still have the problem? I think it's working fine now.

tfchipchip commented

Downloading files...
--2018-07-20 12:55:31-- http://hgdownload.cse.ucsc.edu/goldenpath/hg19/encodeDCC/referenceSequences/male.hg19.fa.gz
Resolving hgdownload.cse.ucsc.edu (hgdownload.cse.ucsc.edu)... 128.114.119.163
Connecting to hgdownload.cse.ucsc.edu (hgdownload.cse.ucsc.edu)|128.114.119.163|:80... connected.
HTTP request sent, awaiting response...

I tried just now- yes, I still have problem downloading. I believe it's the issue on the UCSC end too. Any other alternative way to download hg19 if this keeps having problems?

Thanks!