Continuing pipeline from set point

[BartTheeuwes]

Dear,

Thank you all for making this package. I'm currently trying to run ChromBPNet on the tutorial data. I have noticed that every time I rerun chrombpnet pipeline, I need to restart from scratch and delete the old chrombpnet_model folder. Because of this, it is regenerating the bigwig files from the Bam input every time. I expect that it should just be able to continue from a previously generated bigwig file, especially when training the same model with different folds... Is there a way to make the chrombpnet pipeline pick up from a specific point, or even just specifically from the training step?

All the best,
Bart

[akundaje]

We will try to add this feature in the future (early next year) with a significant refactor as well. We currently don't have bandwidth to add this feature.

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On Sun, Sep 15, 2024, 9:18 AM BartTheeuwes ***@***.***> wrote: Dear, Thank you all for making this package. I'm currently trying to run ChromBPNet on the tutorial data. I have noticed that every time I rerun chrombpnet pipeline, I need to restart from scratch and delete the old chrombpnet_model folder. Because of this, it is regenerating the bigwig files from the Bam input every time. I expect that it should just be able to continue from a previously generated bigwig file, especially when training the same model with different folds... Is there a way to make the chrombpnet pipeline pick up from a specific point, or even just specifically from the training step? All the best, Bart — Reply to this email directly, view it on GitHub <#207>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AABDWEJNLQMIWNRKTNA3ODTZWWXNXAVCNFSM6AAAAABOH6JBBKVHI2DSMVQWIX3LMV43ASLTON2WKOZSGUZDOMBQGI3TCMI> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>