kushalkolar
Neuroscience, image analysis, and scientific visualization stuff :parrot: :rocket: :milky_way:
Flatiron CCN & NYUChapel Hill, NC
Pinned Repositories
fastplotlib
Next-gen fast plotting library running on WGPU using the pygfx rendering engine
AwesomeImager
Application for volumetric imaging using an Electrically tunable lens (ETL)
lazytensor
An interface for lazy evaluation of tensors in linear algebra routines
MESmerize
Platform for Calcium Imaging analysis. DEPRECATED.
mesmerize-viz
Widgets for calcium imaging analysis visualization in notebooks
mesmerize-workshop-ccn-2022
Materials related to the Mesmerize sections of the CCN 2022 Calcium & Voltage Imaging Workshop
nuset-lib
NuSeT packaged as a library with an easy to use API
wgpu-viz-prototype
Prototype for very fast visualizations in the browser and browser
mesmerize-core
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
tslearn
The machine learning toolkit for time series analysis in Python
kushalkolar's Repositories
kushalkolar/MESmerize
Platform for Calcium Imaging analysis. DEPRECATED.
kushalkolar/lazytensor
An interface for lazy evaluation of tensors in linear algebra routines
kushalkolar/mesmerize-viz
Widgets for calcium imaging analysis visualization in notebooks
kushalkolar/caiman-core
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
kushalkolar/serenity
Realtime analysis & visualization of calcium imaging data
kushalkolar/admin-requests
kushalkolar/auto-cnmf
An attempt at automated CNMF using gradient descent
kushalkolar/band-artifact-removal
Algorithm for removal of noise bands from calcium imaging data
kushalkolar/ccn-template
Template repository for CCN software projects
kushalkolar/gpu-binding-unbinding
scripts for unbinding or rebinding my nvidia GPU and reloading drivers
kushalkolar/gpu-passthrough-tutorial
kushalkolar/improv
Adaptive Platform for Neuroscience Experiments
kushalkolar/jupyter_rfb
Remote Frame Buffer for Jupyter
kushalkolar/kushalkolar
kushalkolar/LinAlg4DataScience
Code that accompanies the book "Linear Algebra for Data Science"
kushalkolar/localmd
Accelerated local matrix decomposition for calcium imaging data
kushalkolar/napari
napari: a fast, interactive, multi-dimensional image viewer for python
kushalkolar/ophys-sandbox
kushalkolar/pipeline_2p
Preprocessing pipeline for 2p imaging data, VR behaviour data and synchronization between the two.
kushalkolar/pygfx
Powerful and versatile visualization for Python.
kushalkolar/pynapple
PYthon Neural Analysis Package :pineapple:
kushalkolar/rnn-go-brr
Sentient food pellet grabber project for deep learning class
kushalkolar/rtes-project
kushalkolar/scikit-ophys
Trying to alleviate the pain associated with calcium imaging analysis
kushalkolar/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
kushalkolar/symmetric-nmf
Symmetric NMF in python
kushalkolar/tapnet
kushalkolar/tifffile
Read and write TIFF files. Forked from https://pypi.org/project/tifffile
kushalkolar/wgpu-compute-shaders-sandbox
learning compute shaders to see if we can eventually implement standard matrix decompositions in wgsl
kushalkolar/wgpu-py
Next generation GPU API for Python