Pinned Repositories
assembly-nf
biobloom
Create Bloom filters for a given reference and then to categorize sequences
fetchdatairidanext
Pipeline for downloading data from INSDC databases for IRIDA Next.
INC-Seq
INC-Seq: Accurate single molecule reads using nanopore sequencing
iridanextexample
An example pipeline for running on IRIDA Next
isolationWorkflow
R package to help with workflow of building a strain library during isolation experiments. Allows you to preview, trim Sanger sequences before organizing into a fasta file that is ready to BLAST. Reads Blast results, and aligns sequences in order to build and curate a strain library
nf-explore
Learning how to use nextflow using paired-end RNA-seq data (pulled from nextflow.io/training).
pipeline-standards
Guidelines for developing Nextflow pipelines for IRIDA Next.
snvphylnfc
SNVPhyl nf-core Pipeline (Development)
neptune
Neptune: Genomic Signature Discovery
kylacochrane's Repositories
kylacochrane/nf-explore
Learning how to use nextflow using paired-end RNA-seq data (pulled from nextflow.io/training).
kylacochrane/assembly-nf
kylacochrane/biobloom
Create Bloom filters for a given reference and then to categorize sequences
kylacochrane/fetchdatairidanext
Pipeline for downloading data from INSDC databases for IRIDA Next.
kylacochrane/INC-Seq
INC-Seq: Accurate single molecule reads using nanopore sequencing
kylacochrane/iridanextexample
An example pipeline for running on IRIDA Next
kylacochrane/isolationWorkflow
R package to help with workflow of building a strain library during isolation experiments. Allows you to preview, trim Sanger sequences before organizing into a fasta file that is ready to BLAST. Reads Blast results, and aligns sequences in order to build and curate a strain library
kylacochrane/pipeline-standards
Guidelines for developing Nextflow pipelines for IRIDA Next.
kylacochrane/snvphylnfc
SNVPhyl nf-core Pipeline (Development)