kyleaoconnell22
Bioinformatics data scientist at Deloitte and research affiliate at the National Museum of Natural History and at the George Washington University.
Deloitte Consulting LLCRosslyn VA
Pinned Repositories
Alignments-from-O-Connell-et-al.-2020
Alignment files from the manuscript 'Impacts of the Toba eruption and montane forest expansion on diversification in Sumatran parachuting frogs (Rhacophorus)
BDS_genomics_tutorial
DC_GAN_pytorch
Desmognathus_Project
Collection of scripts related to ongoing work on Desmognathus salamanders while at GWU
Exome_Capture_Probe_Design
Python pipeline for creating homologous exons across 3 transcriptomes
FileConversion
general-gcp-training
gyro_hDNA
Pyron_et_al_UML_sp_delim
tutorials
Tutorials on phylogenetic and phylogenomic inference
kyleaoconnell22's Repositories
kyleaoconnell22/BDS_genomics_tutorial
kyleaoconnell22/Pyron_et_al_UML_sp_delim
kyleaoconnell22/tutorials
Tutorials on phylogenetic and phylogenomic inference
kyleaoconnell22/Alignments-from-O-Connell-et-al.-2020
Alignment files from the manuscript 'Impacts of the Toba eruption and montane forest expansion on diversification in Sumatran parachuting frogs (Rhacophorus)
kyleaoconnell22/DC_GAN_pytorch
kyleaoconnell22/Desmognathus_Project
Collection of scripts related to ongoing work on Desmognathus salamanders while at GWU
kyleaoconnell22/Exome_Capture_Probe_Design
Python pipeline for creating homologous exons across 3 transcriptomes
kyleaoconnell22/FileConversion
kyleaoconnell22/general-gcp-training
kyleaoconnell22/gyro_hDNA
kyleaoconnell22/high-level-networks-desmog
kyleaoconnell22/mycosnp-nf
CDCgov/mycosnp-nf
kyleaoconnell22/nf-core-rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
kyleaoconnell22/O-Connell-et-al.-MPE-2019-Cyrto
Biogeography of Cyrtodactylus geckos from Sumatra and Java
kyleaoconnell22/pangeo-genomics-tutorial
kyleaoconnell22/Pop_gen_estimation_with_random_subsampling
subsamples vcffiles to test for the effect of missing data on pop gen estimators
kyleaoconnell22/Probe_Design_Plethodon
Design baits from a single transcriptome
kyleaoconnell22/RNA_seq_binder
kyleaoconnell22/rnaseq-binder-demo
RNA-Seq analysis demonstration using Snakemake and Binder
kyleaoconnell22/sao_tome_caecilians
scripts used in the paper: Incipient speciation and secondary contact in a fossorial island endemic, the Sao Tome caecilian
kyleaoconnell22/sarscov2phylo
Global phylogenies of SARS-CoV-2 sequences
kyleaoconnell22/snakemake-workflows
kyleaoconnell22/SNP-wrappers
Wrappers for running SNP-based analyses
kyleaoconnell22/TargetCaptureAnalyses
Summary and analysis scripts for target capture generated multiple sequence alignments