kylegiffin

kylegiffin's Stars

• nf-core/nanoseq

  Nanopore demultiplexing, QC and alignment pipeline

  Language:Nextflow17979

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.7k628

• kcleal/gw

  Genome browser and variant annotation

  Language:C++2787

• nf-core/viralrecon

  Assembly and intrahost/low-frequency variant calling for viral samples

  Language:Nextflow122110

• huggingface/transformers

  🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

  Language:Python134k26.8k

• latch-verified/.github

  2

• latch-verified/diff-exp

  Differential expression analysis.

  Language:Python91

• latch-verified/pathway

  Associate pathways + gene ontologies with significant genes.

  Language:Python11

• latch-verified/bulk-rnaseq

  Bulk RNA-seq analysis.

  Language:Python354

• kylegiffin/verified

  Curated bioinformatics workflows written with the LatchBio SDK.

  1

• churchlab/UniRep

  UniRep model, usage, and examples.

  Language:Python33996

• MissionBio/mosaic

  Tertiary analysis package to visualize single-cell data generated by the Tapestri Platform.

  166

• nf-core/rnaseq

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  Language:Nextflow896705

• nahid18/shasta

  De novo assembly from Oxford Nanopore reads on LatchBio

  Language:Python7

• JLSteenwyk/latch_library

  A library of code snippets used in Latch SDK development

  114

• nahid18/Awesome-LatchBio

  A curated list of awesome Bioinformatics pipelines and software available on LatchBio

  144

• google-deepmind/alphafold

  Open source code for AlphaFold.

  Language:Python12.7k2.3k

• pinellolab/CRISPResso2

  Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

  Language:Python27695

• latchbio/latch

  a python bioinformatics framework

  Language:Python16317

• latchbio/public-js

  Public JavaScript modules

  Language:TypeScript7

• LabShengLi/nanome

  NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)

  Language:Python307

• rhpvorderman/tools-iuc

  Tool Shed repositories maintained by the Intergalactic Utilities Commission

  Language:HTML1

• grailbio/gql

  Query language for bioinformatic data

  Language:Go72

• openwdl/wdl

  Workflow Description Language - Specification and Implementations

  769307

• grailbio/bigmachine

  Bigmachine is a library for self-managing serverless computing in Go

  Language:Go19920

• cnobles/iGUIDE

  Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.

  Language:R209

• AdrianArtiles/viral-waitlist-api

  Language:TypeScript91

• GMOD/jbrowse-components

  Source code for JBrowse 2, a modern React-based genome browser

  Language:TypeScript20862

• pinellolab/PrimeDesign

  Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!

  Language:Python227

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.2k611