kylessmith
I am a Lead Bioinformatics Scientist at the St. Jude Research Hospital working in the area of cancer genomics.
St. Jude Research HospitalMemphis
Pinned Repositories
ailist
Augmented Interval Tree implemented in Cython/C
bcpseg
Bayesian change point segmentation
cbseg
Python implementation of Circular Binary Segmentation
cfdna
Cell free DNA package
dynamicTreeCut
Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
hmmCNV
Copy Number Variation detection by HMM
intervalframe
Interval Frame
ngsfragments
Next Generation Fragment manipulation
SASE-hunter
Signatures of Accelerated Somatic Evolution hunter
SomVarIUS
Somatic variant identification from unpaired samples
kylessmith's Repositories
kylessmith/dynamicTreeCut
Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
kylessmith/ailist
Augmented Interval Tree implemented in Cython/C
kylessmith/SomVarIUS
Somatic variant identification from unpaired samples
kylessmith/cfdna
Cell free DNA package
kylessmith/cbseg
Python implementation of Circular Binary Segmentation
kylessmith/SASE-hunter
Signatures of Accelerated Somatic Evolution hunter
kylessmith/hmmCNV
Copy Number Variation detection by HMM
kylessmith/ngsfragments
Next Generation Fragment manipulation
kylessmith/SASE-mapper
kylessmith/bcpseg
Bayesian change point segmentation
kylessmith/hg19_info
Repository for hg19 genome annotations
kylessmith/hg38_info
kylessmith/intervalframe
Interval Frame
kylessmith/linear_segment
Segmentation of linear data
kylessmith/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
kylessmith/python_circos
kylessmith/bio_tools
various bioinformatic tools
kylessmith/combine_pvalues
kylessmith/genome_info
Genome information
kylessmith/hg19genome
hg19 genome annotation
kylessmith/hg38genome
hg38 annotations
kylessmith/ncls
The Nested Containment List for Python. Basically an immutable interval-tree that is silly fast for both construction and lookups.
kylessmith/projectframe
A collection of DataFrame-like objects for the same project
kylessmith/python_NuPoP