kzb193

Pinned Repositories

CaSpER
Language:R77 7 8228
warp
WDL Analysis Research Pipelines
Language:WDL201 26 6994
SlideCNA
Language:R6 3 22
st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
Language:Python59 6 846
numbat
Haplotype-aware CNV analysis from single-cell RNA-seq
Language:R164 9 18323
AMAT
Adaptive Microbiome Association Test (AMAT)
Language:R0 1 00
chisel
CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links
Language:Python37 10 3311
STARCH
Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
Language:Python18 10 169
Alleloscope
Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows for the more accurate delineation of copy number states and the detection of subclonal copy-neutral loss-of-heterozygosity and mirrored CNA events. On scATAC-seq data, Alleloscope allows integrative multi-omic analysis of allele-specific copy number and chromatin accessibility for the same cell.
Language:R27 3 136
cellsnp-lite
Efficient genotyping bi-allelic SNPs on single cells
Language:C128 8 9211