Pinned Repositories
AMAT
Adaptive Microbiome Association Test (AMAT)
SEACON
A tool for allele-specific copy number profiling.
chisel
CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links
Alleloscope
Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows for the more accurate delineation of copy number states and the detection of subclonal copy-neutral loss-of-heterozygosity and mirrored CNA events. On scATAC-seq data, Alleloscope allows integrative multi-omic analysis of allele-specific copy number and chromatin accessibility for the same cell.
kzb193's Repositories
kzb193/AMAT
Adaptive Microbiome Association Test (AMAT)