lacan
Working as an Image Analyst for the BioImaging and Optics Platform (BIOP) at EPFL along with @romainGuiet
EPFL - SV - PTECH - BIOP Suisse
Pinned Repositories
ij-svg-roi
Class for creating imageJ ROIs from SVG paths
microscopy-icons
Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/
lacan's Repositories
lacan/microscopy-icons
Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/
lacan/ij-svg-roi
Class for creating imageJ ROIs from SVG paths
lacan/CSBDeep
Image restoration for fluorescence microscopy
lacan/bigTiffResampler
A small C# program that can resample very large BigTiff files fast.
lacan/fiji
A "batteries-included" distribution of ImageJ :battery:
lacan/hrm
The Huygens Remote Manager is an open-source, efficient, multi-user web-based interface to the Huygens software by Scientific Volume Imaging for parallel batch deconvolutions.
lacan/ijm-pts
ActionBar for PTS Analysis by the BioImgaing and Optics Platform (BIOP
lacan/ijp-biop-lib-installer
Short Plugin that allows one to load a series of ImageJ1 Macro Functions to the Macro Interpreter of a Running Fiji Library, that way these functions are accessible to all subsequently run macros.
lacan/ijs-TrackMate
some groovy scripts to use TrackMate
lacan/Image_Expression_Parser
lacan/imagej-maven-plugin
A Maven plugin to help development of ImageJ and ImageJ plugins
lacan/imagej1
Wayne Rasband's ImageJ 1.x repository, updated once a night. To develop this code, use https://github.com/imagej/ImageJA.
lacan/imaris-average-spots-by-distance
This XTension takes in a spots object and a distance value and returns a new spots object with spots closer than the given distance removed averaged to a single spot.
lacan/imglib2-introductory-workshop
ImgLib2 Introductory Workshop
lacan/LibInstaller
Macro Function Library installer for Fiji/ImageJ
lacan/list-of-update-sites
The update sites ImageJ knows about automatically
lacan/LocalThickness
lacan/minimal-ij1-plugin
A simple Maven project implementing an ImageJ 1.x plugin
lacan/MorphoLibJ
Collection of mathematical morphology methods and plugins for ImageJ
lacan/PHANTAST-FIJI
Repository for the FIJI/ImageJ implementation of the phase contrast microscopy segmentation toolbox (PHANTAST)
lacan/scripting-groovy
JSR-223-compliant Groovy scripting plugin
lacan/SwissBIAS.github.io
Website for the SwissBIAS network: Swiss BioImage Analysts's network
lacan/TrackMate-multi-log
Some extra modules for TrackMate
lacan/TRACMIT
TRACMIT: Algorithm for Single cells on Micropatterns through mITosis
lacan/UniversalMediaServer
A DLNA-compliant UPnP Media Server.
lacan/w1-dual-z-stack
Code Written Originally for Melina Scholtze by Arne, then Oli This code when run on VisiView, allows for the user to define two different acquisition settings for the same timelapse. Eg. One Brightfield Stack acquisition of 10 planes and a step of 1um, followed by a 2 channel fluorescent acquisition with 3 planes and a step of 0.24um. Contains a simple GUI that manages to get and set laser powers and remembers previous settings.