lafita

Protein sequence and structure modelling.

London

Pinned Repositories

biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Language:Java597 78 452392
eppic
:white_check_mark::x:Evolutionary protein-protein interface classifier
Language:Java8 10 1913
biojava.github.io
The code for the new BioJava homepage.
Language:CSS1 2 00
biopython
Official git repository for Biopython (converted from CVS)
Language:Python1 2 00
motif-search
Search protein structural motifs in the PDB.
Language:Java4 3 14
protein-edm-demo
:1234::twisted_rightwards_arrows: Protein structure modelling using Euclidean distance matrices (EDMs)
Language:R7 2 00
qs-align
:arrow_lower_right::arrow_upper_right::leftwards_arrow_with_hook: Scalable protein quaternary structure alignment algorithm
Language:Java7 3 11
tadoss
:open_hands: TADOSS: TAndem DOmain Swap Stability predictor
Language:Python6 3 60
treks-hpc
High performance version of T-REKS for tandem repeat detection
Language:Java3 2 20
symmetry
:ferris_wheel: Detect, analyze, and visualize protein symmetry
Language:Java27 27 6316

lafita's Repositories

lafita/protein-edm-demo
:1234::twisted_rightwards_arrows: Protein structure modelling using Euclidean distance matrices (EDMs)
Language:R7 2 00
lafita/qs-align
:arrow_lower_right::arrow_upper_right::leftwards_arrow_with_hook: Scalable protein quaternary structure alignment algorithm
Language:Java7 3 11
lafita/tadoss
:open_hands: TADOSS: TAndem DOmain Swap Stability predictor
Language:Python6 3 60
lafita/motif-search
Search protein structural motifs in the PDB.
Language:Java4 3 14
lafita/treks-hpc
High performance version of T-REKS for tandem repeat detection
Language:Java3 2 20
lafita/biojava.github.io
The code for the new BioJava homepage.
Language:CSS1 2 00
lafita/biopython
Official git repository for Biopython (converted from CVS)
Language:Python1 2 00
lafita/build-pfam-course
:books::family: Materials and example for the tutorial to build protein families
Language:R1 2 0
lafita/repeats-webinar
:books::computer:Materials for the EMBL-EBI webinar on protein repeat detection and evolution
Language:Python1 2 0
lafita/Arduino
:robot: Scripts for Arduino UNO
Language:C++2 0
lafita/awesome-adam
Awesome list of applications that extend Big Data Genomics ADAM. CC0 licensed.
2 0
lafita/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell2 0
lafita/biojava
BioJava is an open-source project dedicated to providing a Java framework for processing biological data.
Language:Java3 0
lafita/biojava-tutorial
A tutorial for BioJava
Language:Python2 0
lafita/btm2018-latex
:book::books:Materials for the LaTeX lecture of the BTM module during the EMBL Predoc Course 2018
Language:TeX2 0
lafita/edmcr
Euclidean distance (^2) matrix completion
Language:R1 0
lafita/eppic
Evolutionary protein-protein interface classifier
Language:Java2 0
lafita/inmembrane
Language:Python1 0
lafita/lafita.github.io
Personal website - CV style
2 0
lafita/logo
A repository to host the competition for a new BioJava logo
2 0
lafita/mmtf-fragment-search
Search similar fragments across the PDB using MMTF
Language:Java4 32
lafita/mmtf-hackathon-2018
Hackathon projects repository for MMTF Workshop 2018
Language:Jupyter Notebook2 0
lafita/obf-docs
Official documents of the Open Bioinformatics Foundation
Language:HTML2 0
lafita/research-software
Issue tracker for the software installation on the computing cluster
Language:Shell2 0
lafita/rgn
Recurrent Geometric Networks for end-to-end differentiable learning of protein structure
Language:Python2 12
lafita/science-graphics
:bar_chart::chart_with_upwards_trend:Collection of R scripts to generate common science figures directly from the Linux command line
Language:R2 301
lafita/slurm
Cookiecutter for snakemake slurm profile
Language:Python0 0
lafita/symmetry
Detect, analyze, and visualize protein symmetry
Language:Java3 0
lafita/symmetry-benchmark
Benchmarks for testing the symmetry package
Language:R2 0