lagzxadr

Postdoctoral Research Fellow @GTK-lab, Computational and System Biology, National University of Singapore.

National University of Singapore

Pinned Repositories

aml2019
The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute myeloid leukemia (AML). The final scripts are being generated and will be uploaded shortly.
Language:R10
cb_sniffer
mutation(barcode) caller for 10x single cell data
Language:Python10
chembl_tools
Small scripts to make the most of the ChEMBL API
Language:Python10
clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
Language:R10
CONICS
CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
Language:R10
datasciencecoursera
10
dropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
Language:C++10
eVIP2
Expression-based variant impact phenotyping
Language:Python10
fgsea
Fast Gene Set Enrichment Analysis
Language:R10
GateID
Cell type purification by single-cell transcriptome-trained sorting
Language:R10

lagzxadr's Repositories

lagzxadr/dropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
1
lagzxadr/eVIP2
Expression-based variant impact phenotyping
1
lagzxadr/single_cell_pipeline
Single Cell Analysis Automated Workflow
1
lagzxadr/scCancer
A package for automated processing of single cell RNA-seq data in cancer
1
lagzxadr/VarClust
A Python package for clustering of single nucleotide variants from high-through seqencing data.
1
lagzxadr/popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
1
lagzxadr/vartrix
Single-Cell Genotyping Tool
1
lagzxadr/GateID
Cell type purification by single-cell transcriptome-trained sorting
1
lagzxadr/CONICS
CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
1
lagzxadr/seurat
R toolkit for single cell genomics
Language:R1
lagzxadr/SingleR
SingleR: Single-cell RNA-seq cell types Recognition
Language:HTML1
lagzxadr/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
Language:Python1
lagzxadr/scRNA.seq.course
Analysis of single cell RNA-seq data course
Language:TeX1
lagzxadr/scrna_mutations
Supplementary data for Petti, et al 2019 scRNA mutation publication
Language:Python1
lagzxadr/aml2019
The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute myeloid leukemia (AML). The final scripts are being generated and will be uploaded shortly.
Language:R1
lagzxadr/fgsea
Fast Gene Set Enrichment Analysis
Language:R1
lagzxadr/clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
Language:R1
lagzxadr/monocle-release
Language:R1
lagzxadr/kallisto
Near-optimal RNA-Seq quantification
Language:C1
lagzxadr/sleuth
Differential analysis of RNA-Seq
Language:R1
lagzxadr/chembl_tools
Small scripts to make the most of the ChEMBL API
1
lagzxadr/cb_sniffer
mutation(barcode) caller for 10x single cell data
1
lagzxadr/liger
Lightweight Iterative Gene set Enrichment in R
Language:R1
lagzxadr/scRNA-Seq-TCC-prep
Preprocessing of single-cell RNA-Seq data for input to kallisto
Language:Jupyter Notebook1
lagzxadr/datasciencecoursera
1
lagzxadr/incubator-singa
Mirror of Apache Singa (Incubating)
Language:C++1
lagzxadr/pandoc-crossref
pandoc filter for cross-references
Language:Haskell1
lagzxadr/MAST
Tools and methods for analysis of single cell assay data in R
Language:R1
lagzxadr/pandas-tutorial
适合初级到中级晋升者，有了体系之后就看熟练度了。
Language:Jupyter Notebook1
lagzxadr/scde
R package for analyzing single-cell RNA-seq data
Language:R1