Pinned Repositories
amr-nextflow
A Nextflow-based set of scripts for running the MEG Antimicrobial Resistance AmrPlusPlus pipeline
bear-wgs
USDA ARS BEARRU Whole Genome Sequencing Workflow
cuda-half-testing
cuda-sandbox
Toy examples of CUDA kernels
fast-mle-multinomials
Fast MLE for the Beta-Liouville Multinomial
meta-marc
Metagenomic Markov Models for Antimicrobial Resistance Characterization - Source code
nextflow-singularity-template
A barebones template for Bioinformatics pipelines using Nextflow and Singularity
python-workshop
Notes/Syllabus for the Python Beginner's Workshop
sam-parse-merge
simple-snp
lakinsm's Repositories
lakinsm/amr-nextflow
A Nextflow-based set of scripts for running the MEG Antimicrobial Resistance AmrPlusPlus pipeline
lakinsm/amr-scripts
Scripts used in the MEG pipelines
lakinsm/cuda-sandbox
Toy examples of CUDA kernels
lakinsm/accelges
Automatically exported from code.google.com/p/accelges
lakinsm/amr-dbqc
lakinsm/coverage_sampler
lakinsm/CSU_ChronicWasting
lakinsm/file-parsing
lakinsm/gpu-utils
lakinsm/hquery
Windows GUI for batch queries to the HGNC gene database
lakinsm/iterative_feature_removal
Iterative Feature Removal is a feature selection mechanism that helps identify equivalently-predictive sets of features in data.
lakinsm/JHU_DataAnalysis
lakinsm/Kaggle-Ensemble-Guide
Code for the Kaggle Ensembling Guide Article on MLWave
lakinsm/kaggle-Facebook-V
Second place solution for Facebook V competition on Kaggle
lakinsm/kaggle-ndsb
Winning solution for the National Data Science Bowl competition on Kaggle (plankton classification)
lakinsm/kingry
Repository for the data analysis of the Kingry et al. data set.
lakinsm/maxas
Assembler for NVIDIA Maxwell architecture
lakinsm/meg-fastx-tools
C++ based toolkit for quality control and handling of FASTQ and FASTA files
lakinsm/misc-amr
lakinsm/theano_exercises
Exercises for my tutorials on Theano
lakinsm/Thrust
lakinsm/wgs-meg