This repo contains an R project file for the paper "Highest Concentration of Lyme Disease-Causing Bacteria Found in Blacklegged Ticks in East Toronto Parks."
It contains three folders: inputs, outputs, and scripts. Inputs:
- Source data from the City of Toronto's Open Data Portal
- Reference literature, including Public Health Ontario manual
Outputs:
- The paper folder contains the R Markdown file to generate the paper, a pdf version of the paper, and a complete bibliography.
- The data folder is populated by the R Markdown script. It includes modifications to the original dataset.
Scripts:
- Two scripts for generating graphs, one animated and two static.
- Open
blacklegged_tick_surveillance.Rprojin RStudio - Open
outputs/paper/paper.Rmd - Install libraries using
install.packages()if necessary - Run all code chunks
- The paper is generated to
outputs/paper/