| File Name | Description | Example |
|---|---|---|
| batchrun.sh | Run a command in a batch of nodes. | ./batchrun.sh 1 4 ls |
| copy2all.sh | Copy a list of files/directories into all nodes(from node1 to node10). | ./copy2all.sh yarn-site.xml mapred-site.xml `pwd` |
| delimiter_replace.py | Replace delimiter in a file. | python2 delimiter_replace.py ' ' $'\t' syn.data |
| mat2csv.py | Generate csv file from matrix format. | python2 mat2csv.py mat.data |
| q2a.py | Transform fastq format into fasta format. | python2 q2a.py sample.fq |
| un2fq.py | Transform seq format into fastq format. | python2 un2fq.py sample0.seq |
| update-file-time.sh | Update files' access and modified time. | ./update-file-time.sh timefile |
All(at least most) of the scripts has useage information. Just type ./filename and check the info.
- Finish the TODO in delimiter_replace.py
- Data file templates (under dir
datafiles)
- Pass '\t' to python from command line
A: Use
$'\t'in bash.