Pinned Repositories
CoMW
Comparative Metatranscriptomics Workflow
ampliconnoise
Automatically exported from code.google.com/p/ampliconnoise
CREST
CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification of environmental marker genes from sequencing-based community profiling studies.
Garate_et_al_2022_data
Supplementary data for the article Garate et al. (2022) "Shared and contrasting associations in the dynamic nano‐ and picoplankton communities of two close but contrasting sites from the Bay of Biscay", Environmental Microbiology
Guittar-et-al-Soil-vs-Plant-transplant-communities
MARUMBA
Metamon1
Scripts and R code utilised for analysis resulting in the paper "The impact of DNA extract homogenization and replication on marine sediment metabarcoding diversity and heterogeneity", project Metamon, WP2
Metamon2
Scripts and R code utilised for analysis resulting in the paper with provisional title "Predictive eDNA metabarcoding-based benthic monitoring of impact from offshore oil drilling", project Metamon, WP1
MicrobialMonitoringMandala
Machine learning and traditional approaches to develop new biotic indices (indicators) of ecological status and multiple disturbances
crest4
The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.
lanzen's Repositories
lanzen/CREST
CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification of environmental marker genes from sequencing-based community profiling studies.
lanzen/ampliconnoise
Automatically exported from code.google.com/p/ampliconnoise
lanzen/MicrobialMonitoringMandala
Machine learning and traditional approaches to develop new biotic indices (indicators) of ecological status and multiple disturbances
lanzen/Garate_et_al_2022_data
Supplementary data for the article Garate et al. (2022) "Shared and contrasting associations in the dynamic nano‐ and picoplankton communities of two close but contrasting sites from the Bay of Biscay", Environmental Microbiology
lanzen/Guittar-et-al-Soil-vs-Plant-transplant-communities
lanzen/MARUMBA
lanzen/Metamon1
Scripts and R code utilised for analysis resulting in the paper "The impact of DNA extract homogenization and replication on marine sediment metabarcoding diversity and heterogeneity", project Metamon, WP2
lanzen/Metamon2
Scripts and R code utilised for analysis resulting in the paper with provisional title "Predictive eDNA metabarcoding-based benthic monitoring of impact from offshore oil drilling", project Metamon, WP1